miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|150904922|gb|ES935380.1|ES935380 GACAGAAGAAGAAGAAGAGTGAAGAGTGAAGCTCCTCCTCTCGAACAACAACAATGGCGACAATGGCTGCAATCGGATCC
TTAAAAGTCCCTTCCTCTTCCTCTTCCTCTTCCTCGAACCACACCCGTAGATTATCATCTTCTTCTCAACGGAAGACTCT
CTCGTTCTCGTCGTCTTCTCTTACCGGAGAGAAACTCAACCCCACGCAGGAGATCATCATCTCGAATCTCCCACGTGGCA
ACGAGAGAAGAACGCCATCGATCGTCTCTCCAAAAGCAGTTTCCGATTCGCAAAACTCGCAAACTTGCCTTGATCCTGAC
GCTAGCAGAAGTGTGTTGGGGATAATTCTGGGAGGTGGTGCTGGAACGAGATTGTATCCGCTAACGAAGAAGAGAGCGAA
GCCAGCTGTTCCTCTCGGCGCCAACTACCGTCTCATTGATATCCCAGTGAGCAATTGCTTGAACAGTAACATCTCCAAGA
TCTATGTCCTTACTCAGTTCAACTCCGCTTCTCTCAACCGCCATCTCTCCCGAGCTTACGCCAGCAACATGGGTGGTTAC
AAGAACGAAGGCTTCGTCGAGGTTCTTGCTG




Most similar to sp|Q9M462|GLGS_BRANA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q06190|P2R3A_HUMAN Serine/threonine-protein phosphatase 2A
           regulatory subunit B'' subunit alpha OS=Homo sapiens
           GN=PPP2R3A PE=1 SV=1
          Length = 1150

 Score =  110 bits (276), Expect(2) = 3e-43
 Identities = 50/64 (78%), Positives = 58/64 (90%)
 Frame = +3

Query: 261 LWRKILCSCHDDASRFAYLVAKPSCGYLEQEDFIPLLQDVVETHPGLTFLKDAPEFHSRY 440
           +WRK+L + HDDAS+F  L+AKP+C  LEQEDFIPLLQDVV+THPGLTFLKDAPEFHSRY
Sbjct: 786 MWRKLLNNHHDDASKFICLLAKPNCSSLEQEDFIPLLQDVVDTHPGLTFLKDAPEFHSRY 845

Query: 441 ITTI 452
           ITT+
Sbjct: 846 ITTV 849



 Score = 85.9 bits (211), Expect(2) = 3e-43
 Identities = 36/56 (64%), Positives = 48/56 (85%)
 Frame = +1

Query: 94  ARIEEAFTEFEDEKANICEMGKIAKICGCPLYWKAPMFSASGGQRTGCVSVHSFVS 261
           +RIE AF + E++KA+I EMGKIAK+CGCPLYWKAPMF A+GG++TG V+  SF++
Sbjct: 730 SRIETAFMDIEEQKADIYEMGKIAKVCGCPLYWKAPMFRAAGGEKTGFVTAQSFIA 785


>sp|Q9Y5P8|P2R3B_HUMAN Serine/threonine-protein phosphatase 2A
           regulatory subunit B'' subunit beta OS=Homo sapiens
           GN=PPP2R3B PE=1 SV=2
          Length = 575

 Score =  105 bits (263), Expect(2) = 1e-38
 Identities = 49/89 (55%), Positives = 64/89 (71%), Gaps = 8/89 (8%)
 Frame = +3

Query: 261 LWRKILCSCHDDASRFAYLVAKPSCGYLEQEDFIPLLQDVVETHPGLTFLKDAPEFHSRY 440
           +WRKIL +CHDDA++F +L+  P C YL QEDF+P LQDVV THPGL+FLK+A EFHSRY
Sbjct: 202 MWRKILQNCHDDAAKFVHLLMSPGCNYLVQEDFVPFLQDVVNTHPGLSFLKEASEFHSRY 261

Query: 441 ITTI-----RAIKKHW---LLCSLLNMAS 503
           ITT+      A+ + W   + C+ L  +S
Sbjct: 262 ITTVIQRIFYAVNRSWSGRITCAELRRSS 290



 Score = 75.9 bits (185), Expect(2) = 1e-38
 Identities = 31/56 (55%), Positives = 41/56 (73%)
 Frame = +1

Query: 94  ARIEEAFTEFEDEKANICEMGKIAKICGCPLYWKAPMFSASGGQRTGCVSVHSFVS 261
           ++IE  F  F  E+A + +MG +AK CGCPLYWK P+F  +GG+RTG VSVH FV+
Sbjct: 146 SKIESTFARFPHERATMDDMGLVAKACGCPLYWKGPLFYGAGGERTGSVSVHKFVA 201


>sp|Q9Z176|P2R3A_MOUSE Serine/threonine-protein phosphatase 2A
           regulatory subunit B'' subunit alpha OS=Mus musculus
           GN=Ppp2r3a PE=2 SV=1
          Length = 491

 Score = 95.1 bits (235), Expect(3) = 3e-34
 Identities = 40/68 (58%), Positives = 51/68 (75%)
 Frame = +3

Query: 249 LICVLWRKILCSCHDDASRFAYLVAKPSCGYLEQEDFIPLLQDVVETHPGLTFLKDAPEF 428
           +   +WRK+L +CHDDA+RF  L+  P C  L QEDF+P LQDVV +HPGL FL+ A +F
Sbjct: 141 MFVAMWRKVLLTCHDDAARFVRLLGHPGCSGLIQEDFVPFLQDVVNSHPGLAFLRAAKDF 200

Query: 429 HSRYITTI 452
           HSRYITT+
Sbjct: 201 HSRYITTV 208



 Score = 69.3 bits (168), Expect(3) = 3e-34
 Identities = 31/56 (55%), Positives = 40/56 (71%)
 Frame = +1

Query: 94  ARIEEAFTEFEDEKANICEMGKIAKICGCPLYWKAPMFSASGGQRTGCVSVHSFVS 261
           A +E AF      +A + +M  +AK CGCPLYWKAP+F A+GG+RTG VSVH FV+
Sbjct: 89  ALVECAFEGLPRGRAGLGDMAVVAKACGCPLYWKAPLFYAAGGERTGSVSVHMFVA 144



 Score = 22.7 bits (47), Expect(3) = 3e-34
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +2

Query: 11  STPLSINIPRFYFPKGLP 64
           S P    +P FYFP G P
Sbjct: 60  SPPPGHTVPAFYFPCGRP 77


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small
           subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2
           SV=1
          Length = 520

 Score =  303 bits (777), Expect = 4e-82
 Identities = 161/179 (89%), Positives = 161/179 (89%)
 Frame = +3

Query: 54  MATMAAIGSLKVPXXXXXXXXXXXXXXXXXXQRKTLSFSSSSLTGEKLNPTQEIIISNLP 233
           MATMAAIGSLKVP                  QRKTLSFSSSSLTGEKLNPTQEIIISNLP
Sbjct: 1   MATMAAIGSLKVPSSSSNHTRRLSSSS----QRKTLSFSSSSLTGEKLNPTQEIIISNLP 56

Query: 234 RGNERRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVP 413
           RGNERRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVP
Sbjct: 57  RGNERRTPSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVP 116

Query: 414 LGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 590
           LGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA
Sbjct: 117 LGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLA 175